rs33694468 SNP Detail

Summary

• ID
  rs33694468
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138154729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTATGATAC AAAACAAAAC AAACAAACAA AAAAATAAAT AAATAAAAGT GCACCATGGG
  TTTTGGTTTT TGTTTTGTTT TTCTGGTTTT TTTTTTTTTA AGATTTATTT TATTTATTAT
  ATGTAAGTAC ACTGTAGCTG TCTTCAGATA CCAGAAGAGG GAGTCAGGTC TTGTTACAGA
  TGGTTTTGAG CCACCATGTG GTTGCTGGGA TTTGAACACA GGACCTCCGG AAGAGCAGTC
  AGTGCTCTTA ACCACTGAGC CATGTCTCCA GCCCCCGTTT TTGTTTTTTT TTTTTTTTTG
  K
  TTTTTTGTTT TTTTTTTTTT ACTCATCAAT TTTTCTTTAA TTATTTTGAA CATTCTCACT
  AATTAAGAAA ATATTTTATT TCAAAACTTC TTATAGTAGA AAAAAGGATT ACCTTTTTAA
  CATGATTTCT CCACTGCTTG ATAAGTATAA TAGTTATATT TTTAAAATTT GGAATTTATG
  TTGGTGCTAA TGATATTATA TCCAAAATAG CACCATGGGT TTTTTTTTAA AGCACTCAGC
  ACTCAGTTTT TAAAAGATTT ATTTTAACCA GGCAGTGGTG GTGCACGCCT TTAATCCCAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45810035	mCV22887495	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33694468					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138154729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16854	CpG island 16854	601 bp distal
Rr399442	regulatory region 399442	482 bp downstream
Rr623038	regulatory region 623038	774 bp distal
Rr623039	regulatory region 623039	259 bp distal
Rr623040	regulatory region 623040	133 bp distal
Tssr54073	transcription start site region 54073	727 bp upstream
Zfp113	zinc finger protein 113	723 bp upstream