rs33694550 SNP Detail

Summary

• ID
  rs33694550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7010620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGGGAG GGGGCCCTGG
  GTATGTACAT GTGTGTACAC CGCTTGTATA TTCGTGGTTT ATGTGTGGTG TGCCTAGCAT
  GGGTGTGCAC ACGCTAAATC TCAGCCTAGA GAGGCCCCTC TTGCACTGAG AGAGCTGGTT
  ATCGCTGGCT CCATGTTTTG GTATCTGCTT CTCCAGCTCC TCATCCTGTC ACCACCCGTC
  M
  TTTCCTGTTC CTTCCTGTAT GCTACACCTT AACTTCTGAG CTTCCCGTCC CCTCTCACGC
  TGCCACAGAC TGCCCTGACC TCCATCCACT GCTCTGGATT CCTGAGCCAG GGATGCACCA
  CAGCCTTACA GTGCTACTCC TACCAACCAT GTTGACCAGC CCTGAGCTCG ATTCCACACA
  CACCCTCAAG CATCCTGCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48344196	NES12258558	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33694550					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344196	NES12258558	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7010620 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr342727	regulatory region 342727	within coordinates
Tssr4994	transcription start site region 4994	1964 bp upstream
Tssr4995	transcription start site region 4995	56 bp upstream
Tssr142476	transcription start site region 142476	845 bp downstream
Tssr146320	transcription start site region 146320	588 bp downstream
Tssr146321	transcription start site region 146321	617 bp downstream