rs33694553 SNP Detail

Summary

• ID
  rs33694553
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7010054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTACCACCA GCACAGGGAT GCCATAGCCT GTGTCTGTGT
  CCCTGCTTGA TCCCAACTGG GCTGCTGAGC AGACACTTGA GGATGCAGCT GTCCAGGCCC
  K
  CGGTCCCTGC TGGCACTGTG TCCTGGCCAC TCACCGCTCT AGCTGCTTCT GGTGCTTCTC
  CTCCCGAGCC TGGGCCTTCA TCTGCTGCAC CTCGATGGTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48344199	NES12258551	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33694553					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344199	NES12258551	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7010054 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr342727	regulatory region 342727	within coordinates
Tssr4994	transcription start site region 4994	1398 bp upstream
Tssr4995	transcription start site region 4995	622 bp upstream
Tssr142476	transcription start site region 142476	279 bp downstream
Tssr146320	transcription start site region 146320	1154 bp downstream
Tssr146321	transcription start site region 146321	1183 bp downstream