rs33695288 SNP Detail

Summary

• ID
  rs33695288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7007434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCTCCT CTTTGGTCTT
  CACCAGGTCG TCCTGGGCTT CTTTAGCCTT TGGAGAGGAG AATGCTGGTC AAGTGAGGAC
  CCTTACACAT CCCATCATGG AACGGTCTGC CGGCCGGCTA GGAGCCCGGG GAATCCCGCC
  TCCCCTTGGC TCTTGGCTGG AGTGACAGCA CATACACTGC AATCAGAAAA CTCAAGATTC
  Y
  GGACCCTGGA CACTCGAGAG CACAACCATT TCTCTCTGCC TGTAATCCGG GTACATGCTC
  ATCGGCTCTG TTCTCCAGCG ACTGGAAGTG CTACCACTTG GAGTAGGTCT GCATGGATCT
  CGCTCTTAAG AGTGTCAGCC AGGGGCCCAG ACCCAGCCTC ATCCACCTGC ACCCCTTTCT
  AGGTCAGCCT GACCCTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48344204	NES12258543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33695288					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344204	NES12258543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7007434 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332779	regulatory region 332779	434 bp distal
Rr335834	regulatory region 335834	1634 bp distal
Rr342727	regulatory region 342727	within coordinates
Sytl3	synaptotagmin-like 3	1991 bp downstream
Tssr4994	transcription start site region 4994	1200 bp downstream
Tssr146319	transcription start site region 146319	205 bp upstream