rs33695388 SNP Detail

Summary

• ID
  rs33695388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150630015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTTAGT AGGAAAACAA
  AATACACTGA ACGGAGCCTT TGACAGTTCT CACCACCCCA ACCCCCAAAA CTTCTCAGCT
  CTGTCTGCTG GACTGCTAAC TCTGTGCAAT TAAGCTGGCT TCAAACCCAC GGAAACCCAC
  CAGCCTCTGC CTCCAGAGTG CTGGGATTAT TAAGGCGTGT GCCAGCTCCA CCAGGTCCCC
  Y
  AGTCCTCCTT ATTCTGTTCC GTTTATGTTT CCAGGTAATT GCTGTTCCTA AATACACAGG
  TATGCATATT TGTATGCTGC ACAATTTTGT GGCTTTTATT TCATCCGAAA CCATTTGTGG
  CTTCACTCAT AAACAGGGCT CTGGGTCAGT AATACATACT GGTGCTTTTA AGCTTATGCA
  GGTATCATAT TTTTACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45309920	mCV24554255	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147950604	ENSMUSSNP661436	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33695388					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150630015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	723 bp distal
Gm30141	predicted gene, 30141	1401 bp upstream
Gm57834	predicted gene, 57834	524 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	1249 bp downstream
Rr567101	regulatory region 567101	1350 bp distal
Rr567102	regulatory region 567102	682 bp proximal
Tssr20709	transcription start site region 20709	1301 bp downstream
Tssr20710	transcription start site region 20710	1278 bp downstream