rs33695447 SNP Detail

Summary

• ID
  rs33695447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45818572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGATATAC GGGGGACCAT
  GGACCGGGGC TGGTCGGCGT CTGCGGAGGA GGTCCTTCGC TGAGGGCACC TTGGGTCCTG
  GCGTGGGCGA CCCCAGAGGG ACCGGGTCTC CGGGTCGTAG GTTCCGGACA GCATCGGTCC
  TAAGGAGAGA GAGGCACATT GCACGGAGCA GCTGAGTCCG CGTGGGAGTG GGGGCATCAG
  R
  AAACTCACTC TGTACAGACC CTGGTTCCTG TGAGTGGGGA GGCGGGGCTT GAAGGACGGT
  GGTTTAAGAG CAGAATCTTG AGCAGGAAAG GTGCCCGTCT ACCTTAGTTG AGGGTGATGG
  GAGTCTATTT TCAGAAAGTG CTTAAGATTT CTTGCTCAGA GGTCTGAGAA TAAGTGCTGC
  TGTGCCTCTG GACCACAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46307489	mCV25171694	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss136420510	ENSMUSSNP7084143	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33695447					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45818572 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21697	CpG island 21697			within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rnf214	ring finger protein 214			363 bp upstream
Rr677992	regulatory region 677992			878 bp distal
Rr677993	regulatory region 677993			767 bp distal
Rr677994	regulatory region 677994			812 bp distal
Rr677995	regulatory region 677995			416 bp distal
Rr677996	regulatory region 677996			744 bp distal
Rr677997	regulatory region 677997			279 bp distal
Rr677998	regulatory region 677998			within coordinates
Rr677999	regulatory region 677999			384 bp proximal
Tssr84815	transcription start site region 84815			722 bp downstream
Tssr84816	transcription start site region 84816			261 bp downstream
Tssr89273	transcription start site region 89273			837 bp upstream
Tssr89274	transcription start site region 89274			380 bp upstream
Tssr89275	transcription start site region 89275			353 bp upstream
Tssr89276	transcription start site region 89276			311 bp downstream