rs33695724 SNP Detail

Summary

• ID
  rs33695724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20889300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CCCACGTGCA TGCACGCACA
  Y
  GGGTATAAAG TTAAAATTAA TAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46306752	mCV27566471	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136225119	ENSMUSSNP3960244	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss322873763	CHEV_9_20782448	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33695724					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20889300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	925 bp distal
Rr193935	regulatory region 193935	500 bp distal
Rr206018	regulatory region 206018	699 bp distal
Rr383049	regulatory region 383049	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	1211 bp upstream
Tssr88347	transcription start site region 88347	1285 bp upstream
Tssr88348	transcription start site region 88348	1256 bp upstream
Tssr88349	transcription start site region 88349	1230 bp upstream
Tssr88350	transcription start site region 88350	1302 bp downstream