rs33699178 SNP Detail

Summary

• ID
  rs33699178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50407110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTGCCC ACCCCACCTC
  CCCCACAGCC ACCTGCTTGC TCCAGATAGA GTGCTGTGGG AACAGAGGCA CTCTATGTAC
  ATCTGCATTA TAATGCTAAC ATGACTTACA TCTAAGGGGG AAATGCCATT ATTAACCTCC
  ATTATCCAGG GGAGAAAGAA GGCATACAGA AGTAAAGTTT TTACCCAAGG TCACTAGAAC
  R
  CAACAGAATT AATATTTGAA CCTAAGGAAC TTAGCCAAAA GCCAGCCAGC CTTCTTAGCT
  CCTACGCCAC CCTTCCTCTC TTAGTCTAAG CAAACTTTGC AGAGGTCACT ATGGTGACTG
  CGTGCGCGTG ATCTGCAGAG TCCCAGCCTG GAAGGTGAGC CACCACACCA GACCTCCCCA
  CTCTGCTGCT TGTCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46307613	mCV24342320	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss136476436	ENSMUSSNP588687	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33699178					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50407110 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678654	regulatory region 678654	1273 bp distal
Rr678655	regulatory region 678655	27 bp proximal
Rr678656	regulatory region 678656	752 bp proximal
Tssr2866	transcription start site region 2866	1753 bp downstream
Tssr85023	transcription start site region 85023	1664 bp downstream
Tssr85024	transcription start site region 85024	1538 bp downstream
Tssr85025	transcription start site region 85025	1277 bp downstream
Tssr85026	transcription start site region 85026	966 bp upstream