rs33700707 SNP Detail

Summary

• ID
  rs33700707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTCTGT GCTGGGCAGT
  AGCTCAGTTT CAGCAAAGTC ACCCTCTCAA ACTCATAAGC CACAGGGCAC ATTTGCAAGG
  ATGAATGCAA GTTGCACAGG AAGGCTCTGG CAACAGGCAG TTTCAATGTG ATATCCCTTT
  TCTGCCTCCC ATTAATGCCC AGAATCCCTG ACCCTGGGCA AGGCTTGTCC TGTGATATCA
  Y
  GGGACTCCTC CAGGGGGCGC TGTCCCATTC TGCACTGGGC AAATGTCTGC TGATGATAGG
  AGCCTTCCCT GCAGAGCAGT CACCATAGGA GACAAAATAA TGAGCTCCCG GGTGCCAGCC
  TTGACTGAGA GAAGACTCCA GGTCCCCAGC ATAACTGGTG TCCAGGGTGT TTCCTGTGGG
  AGGATCCCAC CCTGGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45310740	mCV22943478	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148265691	ENSMUSSNP657961	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33700707					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1961 bp distal
Rr570862	regulatory region 570862	1956 bp distal
Rr570863	regulatory region 570863	within coordinates
Rr570864	regulatory region 570864	3 bp proximal
Tssr27824	transcription start site region 27824	919 bp upstream