rs33700817 SNP Detail

Summary

• ID
  rs33700817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG CGCGCCTAGT AGAAGGCAGC
  R
  CCCTAAGGAA GTGGAAGGGG ATGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46307557	mCV24724780	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss61410338	NES16794833	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	A	G	G	G	G	G
ss136560659	ENSMUSSNP2115536	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33700817					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410338	NES16794833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	within coordinates
Rpl4	ribosomal protein L4	644 bp downstream
Rr368801	regulatory region 368801	within coordinates
Rr681196	regulatory region 681196	26 bp distal
Rr681197	regulatory region 681197	40 bp proximal
Rr681198	regulatory region 681198	174 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	within coordinates
Tssr85601	transcription start site region 85601	1912 bp downstream
Tssr85602	transcription start site region 85602	1858 bp downstream
Tssr85603	transcription start site region 85603	1572 bp downstream
Tssr85604	transcription start site region 85604	1530 bp downstream
Tssr85605	transcription start site region 85605	954 bp downstream
Tssr85606	transcription start site region 85606	894 bp downstream
Tssr85607	transcription start site region 85607	28 bp downstream
Tssr85608	transcription start site region 85608	within coordinates
Tssr90132	transcription start site region 90132	1499 bp upstream
Tssr90133	transcription start site region 90133	931 bp upstream
Tssr90134	transcription start site region 90134	861 bp upstream