rs33700969 SNP Detail

Summary

• ID
  rs33700969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26196355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATGGCT CAGTGGATAA
  GAGCACCCGA CTGCTCTTCT GAAGGTCCGG AGAGTTCAAA TCCCAGCAAC CACATGGTGG
  CTCACAACCA TCTGTAACAA GATCTGACGC CCTCTTCTGG AGTGTCTGAA GACAGCTACA
  GTGTACTTAC ATATAATAAA TAAATAAATC TTAAAAAAAA AAAAAGAAAA GAAATGTACC
  Y
  CAGCATTTCT GGTGCTTCTC TCTCATACCC AAACACTGAG TTGGGGAGAG GGAGGAAAGA
  GTATTGAGTT AGGCTTAGCA CAAATGCCCA TGGGGCAAAA ATTGTTCACC ACAGGGTCTT
  TCCCACATTT ACTATGAAAG CAGGAAATAT ATTCAGGGGC TGCCCATCTG CCTACAGGAA
  GATTACCTGC TCCTCCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39568066	mCV23810057	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss145395975	ENSMUSSNP108177	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss325339343	CHEV_17_26114326	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33700969					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26196355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Capn15	calpain 15			Intron
				Noncoding-Transcript-Variant
Rr523724	regulatory region 523724			76 bp distal
Rr523725	regulatory region 523725			1458 bp proximal