rs33702132 SNP Detail

Summary

• ID
  rs33702132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72571643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC AGCTATAGAC ATGGTGCACA
  Y
  AAGCACATGC AGCAAGACAC ACACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46307765	mCV24209369	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136623057	ENSMUSSNP4134283	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323002781	CHEV_9_72512168	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33702132					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72571643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	947 bp distal
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	1869 bp distal
Rr682798	regulatory region 682798	463 bp proximal
Rr682799	regulatory region 682799	500 bp proximal
Tssr86019	transcription start site region 86019	1949 bp downstream
Tssr86020	transcription start site region 86020	1893 bp downstream
Tssr86021	transcription start site region 86021	1838 bp downstream
Tssr86022	transcription start site region 86022	592 bp downstream
Tssr90495	transcription start site region 90495	1091 bp upstream
Tssr90496	transcription start site region 90496	1064 bp upstream
Tssr90497	transcription start site region 90497	1035 bp upstream