rs33703369 SNP Detail

Summary

• ID
  rs33703369
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96357864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTCAGA GAACCAGGTT
  CCCTCTATTT AAATGACCGT TCGGAGTACA TCTGCAGGGT CCAAAATTAA AAATAAGAAG
  GAATGAATAA TTAATTACAG AGTTTTCAAC AAAGCCATTC CCCACCCCCG CCCCGAAGGT
  TGATAAACCT TTGAACCCGA GCCACGAAAG GCAGTCTCAG ACAGGGAACC GACAGGAACC
  K
  CGCCACGAGG GCACTGAAGC CAGGTCGTCC CCGCCCTGCT CTTCTGCTCC TACCAACTCC
  TTCCCCCTTT GCCAGCTTCC GCGCGGAACC CTTTTTCGCA TTTCCGTGCA GTTGAAACCC
  GGGACCCACT TCGTCAGCAC AATCCGGAAC AGTCAACATG GCGGCGGCCG TAAGGTGCCT
  CCGTAGAGGT AAGAGGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45811892	mCV25015038	ABI	CRAMUS_MOUSE	f	SNP	G	T					T		T
ss51771857	NES14721821	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		G	T	T	T		T	T	G		G
ss148870822	ENSMUSSNP1970219	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T							T
ss321616898	CHEV_5_96639024	CHEVERUD	SCREENING_POP	f	SNP												T				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33703369					SNP	G	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771857	NES14721821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96357864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	within coordinates
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	within coordinates
Rr614892	regulatory region 614892	1094 bp distal
Rr614893	regulatory region 614893	502 bp distal
Rr614894	regulatory region 614894	within coordinates
Rr614895	regulatory region 614895	37 bp proximal
Rr614896	regulatory region 614896	150 bp proximal
Tssr47395	transcription start site region 47395	517 bp downstream
Tssr47396	transcription start site region 47396	242 bp downstream
Tssr47397	transcription start site region 47397	123 bp upstream
Tssr51962	transcription start site region 51962	within coordinates