rs33703929 SNP Detail

Summary

• ID
  rs33703929
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT CCTGGAACTC ACTCTGTAGA
  S
  CAGGCTGGCC TCGAACTCAG AAAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39568645	mCV24347724	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss145361451	ENSMUSSNP4305062	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss325333065	CHEV_17_24832061	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33703929					SNP	C	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	488 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	1118 bp upstream
Rr523392	regulatory region 523392	580 bp proximal
Rr523393	regulatory region 523393	942 bp proximal
Rr523394	regulatory region 523394	1403 bp proximal
Tssr5034	transcription start site region 5034	1440 bp downstream
Tssr143060	transcription start site region 143060	1160 bp upstream
Tssr143061	transcription start site region 143061	1544 bp upstream
Tssr146764	transcription start site region 146764	871 bp downstream
Tssr146765	transcription start site region 146765	949 bp downstream
Tssr146766	transcription start site region 146766	1005 bp downstream
Tssr146767	transcription start site region 146767	1031 bp downstream
Tssr146768	transcription start site region 146768	1081 bp downstream
Tssr146769	transcription start site region 146769	1389 bp downstream
Tssr146770	transcription start site region 146770	1425 bp downstream
Tssr146771	transcription start site region 146771	1453 bp downstream