rs33704749 SNP Detail

Summary

• ID
  rs33704749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATATGCAAA TGATACGCGA TCCGTTCGCC GTTCGGAGGG CGGGGCCCTC ATTTGCATAT
  TTATGAGAGG AACCGAATGC TGTGGTGTAA TTATTGCTTC GGCCGGTCCG GTCCGAGCCG
  GTCCGGTCCG AGCCGAGGCC GCCCAGTCCG CTCGGAGCTG AAAACCGGAA CCCGGTGGTG
  GTGGGGGAGG GGCGAGAGGA AGGGGGAGGG ATATAGGCGA CGGGGGCGGG GCGATAGGGC
  AGGGCCAACG CAATAAATGG ACGAGGTGAC GTCACCAACA CGGGCGTGTC CCGGCTTCCG
  Y
  TTCCGGTCAA TCACCCGGAT TGGGGCGCCG TATAGGGGCG CGACCACATT GACATCACCG
  CTTTCTTCCT GCCAGGGTGG GCGTGGCCAC CGTCCTCCGC TGTTTGTCAG TCATTAGCAC
  TTGCGGTTAT TCCCCTGCCT CACCTCTGTC AGTCCGGGAC GCGGGGCGGG TGGCGTAATG
  TCCCTGTGAC GTCACACACG ACTCCGCTGC TGCTCAGGTC CTGTTCCGGG TCGAGCGGGC
  CGGGGCGGCG TCAGGGGTTC CGCGAGGAAG GGGCCCGTGC GCACTGGATG TCATCCCCTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46308237	mCV24426991	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss134041064	ENSMUSSNP2820087	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33704749					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194303 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	822 bp downstream
Gm20783	predicted gene, 20783	1782 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	1109 bp upstream
Rr689518	regulatory region 689518	382 bp distal
Rr689519	regulatory region 689519	619 bp proximal
Rr689520	regulatory region 689520	1487 bp proximal
Rr689521	regulatory region 689521	1603 bp proximal
Tssr3097	transcription start site region 3097	1959 bp upstream
Tssr3098	transcription start site region 3098	1608 bp upstream
Tssr3099	transcription start site region 3099	1505 bp upstream
Tssr3100	transcription start site region 3100	1480 bp upstream
Tssr3101	transcription start site region 3101	1368 bp upstream
Tssr3102	transcription start site region 3102	1225 bp upstream
Tssr3103	transcription start site region 3103	1183 bp upstream
Tssr3104	transcription start site region 3104	1091 bp upstream
Tssr3105	transcription start site region 3105	981 bp upstream