rs33704826 SNP Detail

Summary

• ID
  rs33704826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155619974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTTAC CTAAATACCC
  AACAAAAGAA AGTGGTTTGA AGAAGCATAT TAGATTTGCT AGGTATTATC TTAAATAATC
  ACTGACTCGG ATTATAAGGT CTAGCAACAT AGTAATGCTG TGACAACCAA TAAAAATTAT
  TAGCTAATTA GAAAAGCAGG GATAATACCC ATTGTTCATT TGGGTGTGAA GAAAACAGGA
  M
  AATTCATAGT GAGAATATAA ATGTCTTCTA AGGGCATTTT GACAATAGTT TGTCTGTTTT
  ATACTACTGG GGAAAGAATT CAAAGCATTG CATCTGCTTG GCAGGTAGGC ATGGGCTCTA
  CCATGGAGTT ATATCCCTAA CTTAGGGTAG GATAGTTTAT AGCTTAAAAT GTCATTTATA
  TAGCAATGTA TTCAAAGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	MOLF/EiJ
ss49518350	NES12775988	PERLEGEN	MM_PANEL2	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	MOLF/EiJ
rs33704826					SNP	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49518350	NES12775988	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155619974 () rs orientation: forward

Symbol	Name	Function Class
Lhx4	LIM homeobox protein 4	Intron
Rr421069	regulatory region 421069	1711 bp distal
Rr421070	regulatory region 421070	415 bp distal
Tssr9541	transcription start site region 9541	1713 bp downstream