rs33704828 SNP Detail

Summary

• ID
  rs33704828
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:155616733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCCATC GAGGGAACCC
  TTCATCTCTC TAGGGTACCC AGGGGCACCT AGCCCAGTGC AGCCGTTTGT AAACCCAGAC
  TTAACCAGGA GCCCGCAAGC GCGCGCTAAG CCTGAGAACC TGTTCGGGTC TCTGCACAGA
  TTGCTTCTAT CTGTTCAGGA GTCGGAAACA CAGACAGATT CCCACCCGGA AAATCTCTGC
  S
  GTGTGTGCAC ATCCGTACAA ACCAGAAACC TGGGGTGAGA GACCTGCCGT AACTAATTGC
  AGGCTCTGGA AGAAATTGAG AGAGCTAGCA AAGTGCCCAC ACGTCTGAGT CTCTCTCCCT
  CTTCCAGCCC CGCGCCACTA AGATTGCCTA CCCTCGCCTA AGCAAAGGCT GCACGCACAA
  CTTCGTTCCA GAGCTTCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss49518355	NES12776249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs33704828					SNP	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49518355	NES12776249	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155616733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi888	CpG island 888	within coordinates
Lhx4	LIM homeobox protein 4	within coordinates
Rr28763	regulatory region 28763	within coordinates
Tssr9541	transcription start site region 9541	1522 bp upstream
Tssr14367	transcription start site region 14367	1014 bp downstream
Tssr14368	transcription start site region 14368	1138 bp downstream