rs33704830 SNP Detail

Summary

• ID
  rs33704830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:155616384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGACAG TCAATTCTCC
  AAGGCGCAGC GAACTTTGCA ACTGTTCGCC AACAGGCGAC ACAAGAACTG TAGGCTACAG
  CGGAGGAACA ATCTAAAACA GGCTCAAATG AAGCTATCTC TTCCATTTTT CTCTCAAAAA
  CTTTACAATA AATCTCAAGA CATTGGCTGG ACAGCCCGCC CTGAGATTTG TGTTACAGAA
  Y
  CCCTGCGATG GAGAGGCAGG GCGCAGGAGG GCGCGCTGCT GCGCCGGGGA TCGTAGGTAG
  TCTCCATCCC TGGGTGAGCC TGCTCTTACT TACAATAAAC TCCTACCGCA TCACTAAAGC
  AGTCGTAAGC GGAAGTGTAG TCTCTTGGCA AGCCCATCGA GGGAACCCTT CATCTCTCTA
  GGGTACCCAG GGGCACCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49518357	NES12776246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33704830					SNP	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49518357	NES12776246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155616384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi888	CpG island 888	within coordinates
Lhx4	LIM homeobox protein 4	within coordinates
Rr28763	regulatory region 28763	16 bp proximal
Tssr9541	transcription start site region 9541	1871 bp upstream
Tssr14367	transcription start site region 14367	1363 bp downstream
Tssr14368	transcription start site region 14368	1487 bp downstream