rs33706815 SNP Detail

Summary

• ID
  rs33706815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46741072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCTCTC TGCAGGGGTC
  AACATTGGTG GTGTGGGCTG CTATCTCTAC AACCTCCCAA CTCCCCCTCC TGCCAGCCGC
  ATTTCCCTCA GCCCCAGCAA CTTTAGCCCC CCCAGGCCAA GGACTGGCCT CTCCCGGGCC
  AAGAAAAGTA AGTGAAGGCA GGCGTTAGTT GTTCTCCTTC TGACCCTTCC TCAGGCTGCA
  K
  TAGACACTGT GGTCCTGTTG CTGGCCCTGT TTTTCTGCTC TCGTGTGAGT TGAGTTTAAA
  AGGTAAATTG GACAGATAGC ATGATCACCC TCATTTTACA AGAGATGCCC AGAGAAGACA
  AATGACCACC AAGCAGAAGC AAGGCTGGCC TAGAAATTGG GCCCCTTCCT CCAGCCAGGG
  CATAGAAGGG AAAGACCTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39568476	mCV23183629	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss62759516	NES17344206	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss145699445	ENSMUSSNP6581646	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33706815					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62759516	NES17344206	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46741072 () rs orientation: forward

Symbol	Name	Function Class
Crip3	cysteine-rich protein 3	within coordinates
Rr527733	regulatory region 527733	1185 bp distal
Rr527734	regulatory region 527734	833 bp distal
Tssr144853	transcription start site region 144853	1217 bp downstream
Tssr144854	transcription start site region 144854	1197 bp downstream