rs33707135 SNP Detail

Summary

• ID
  rs33707135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6157918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCAACCCC CCTTCCTCTT TTGCCCCTTC ACTCTCCTAA
  CCCAGCTCCT GCTGCTGATG TGAAGTTTCA CCGTTTGTGG GCAATTAACA AGGAGGTGTC
  Y
  ACTTCTTTCT TTCTGAGGCG CCTCTTGCTG GGAAGATGAG GGCCGTCTAG CTTTGTGGCT
  TGAATTGAAT GTGGAGGGGT TGATAGTCAT CGGTGAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39568968	mCV22810924	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss145081308	ENSMUSSNP6673102	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325290090	CHEV_17_6107643	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33707135					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6157918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	88 bp distal
Gm65964	predicted gene, 65964	1273 bp upstream
Rr340081	regulatory region 340081	within coordinates
Rr405018	regulatory region 405018	626 bp downstream
Tssr4988	transcription start site region 4988	352 bp downstream
Tssr142458	transcription start site region 142458	1161 bp downstream
Tssr142459	transcription start site region 142459	1080 bp downstream
Tssr142460	transcription start site region 142460	1043 bp downstream
Tssr142461	transcription start site region 142461	1026 bp downstream
Tssr142462	transcription start site region 142462	824 bp downstream
Tssr142463	transcription start site region 142463	805 bp downstream
Tssr142464	transcription start site region 142464	768 bp downstream
Tssr142465	transcription start site region 142465	736 bp downstream
Tssr142466	transcription start site region 142466	721 bp downstream
Tssr142467	transcription start site region 142467	481 bp downstream
Tssr146313	transcription start site region 146313	1336 bp upstream
Tssr146314	transcription start site region 146314	1155 bp upstream
Tssr146315	transcription start site region 146315	1104 bp upstream
Tulp4	TUB like protein 4	within coordinates