rs33708117 SNP Detail

Summary

• ID
  rs33708117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74111440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TTTCACTTCA CCTCAGGCCT
  R
  GTGAAAAGAT AAGTTACTGA TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss39568695	mCV25305842	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	A
ss60279640	NES15784893	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	A	A		A	A	G			A
ss145938491	ENSMUSSNP1852819	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						A
ss325449552	CHEV_17_74153785	CHEVERUD	SCREENING_POP	f	SNP											G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs33708117					SNP	G	A	A	G	A	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279640	NES15784893	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74111440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	231 bp proximal
Ehd3	EH-domain containing 3	396 bp upstream
Rr530824	regulatory region 530824	within coordinates
Rr530825	regulatory region 530825	195 bp proximal
Rr530826	regulatory region 530826	1828 bp proximal
Tssr145810	transcription start site region 145810	383 bp upstream
Tssr145811	transcription start site region 145811	409 bp upstream
Tssr145812	transcription start site region 145812	438 bp upstream
Tssr145813	transcription start site region 145813	457 bp upstream
Tssr145814	transcription start site region 145814	500 bp upstream