rs33708631 SNP Detail

Summary

• ID
  rs33708631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64696604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA GTGATTGAAT TAGAGAGAGC
  Y
  CATGGTACCA AAACTGAACT AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46308576	mCV25282052	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss136565245	ENSMUSSNP6073724	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322985858	CHEV_9_64637129	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33708631					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64696604 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	109 bp upstream
Rr681316	regulatory region 681316	within coordinates
Rr681317	regulatory region 681317	1373 bp proximal
Rr681318	regulatory region 681318	1942 bp proximal
Tssr2909	transcription start site region 2909	1472 bp downstream
Tssr85622	transcription start site region 85622	327 bp upstream
Tssr85623	transcription start site region 85623	341 bp upstream
Tssr85624	transcription start site region 85624	1634 bp upstream
Tssr90157	transcription start site region 90157	1500 bp downstream