rs33709026 SNP Detail

Summary

• ID
  rs33709026
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119352790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGACATT GTTTTCTGGT
  CTCTGTGTGT TAGTACACAC ACACACACAC ACACACACAC ACACGCACAC GCACACGCAC
  ACGCACACGC ACACAGAGAT CAGGATGGGG ACGTAGATTT TCTTGCCTCC TGTGTGAAAG
  TCTCTGGGTT TGATCTCCAG CATTATGAGA AAGAAAGAAA TATAAGTAAA AGGTGTGGGA
  K
  CCTCAGTACA TATTGGACAG CAGAGGGTTA TTACAGCAGT ATTTCCTGCA GAAATCTACT
  GGGTGGGAGA GAGATGACAG AAAACACTGA AATCCACCTT AGGTTCATAT TGATAGTATT
  TCCTGCATTG AGTATTTGCT TATCAGAAAT ATCTATGGGT ATATTACTGA GTCAATGAGG
  TGGGGATAAA ATAAAGTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331273	NES11381460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33709026					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331273	NES11381460	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119352790 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	1343 bp upstream
Rr474302	regulatory region 474302	1995 bp distal
Rr474303	regulatory region 474303	1093 bp proximal
Rr474304	regulatory region 474304	1331 bp proximal
Tssr115574	transcription start site region 115574	1577 bp upstream
Tssr115575	transcription start site region 115575	1635 bp upstream