rs33709029 SNP Detail

Summary

• ID
  rs33709029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:119352912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTCCTG TGTGAAAGTC
  TCTGGGTTTG ATCTCCAGCA TTATGAGAAA GAAAGAAATA TAAGTAAAAG GTGTGGGAGC
  CTCAGTACAT ATTGGACAGC AGAGGGTTAT TACAGCAGTA TTTCCTGCAG AAATCTACTG
  GGTGGGAGAG AGATGACAGA AAACACTGAA ATCCACCTTA GGTTCATATT GATAGTATTT
  Y
  CTGCATTGAG TATTTGCTTA TCAGAAATAT CTATGGGTAT ATTACTGAGT CAATGAGGTG
  GGGATAAAAT AAAGTTCTGC CTTCAAATAA CAATAAGAGT GCTTTACATA TACAAACCCA
  TATAAAATAT GAACACATGG AATAAGAATT TATCAGAAAA ATTATTAAGT GGAAGTGACT
  AACTGATGAA GCCAGATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331276	NES11381461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33709029					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331276	NES11381461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119352912 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	Intron
Rr474303	regulatory region 474303	971 bp proximal
Rr474304	regulatory region 474304	1209 bp proximal
Tssr115574	transcription start site region 115574	1455 bp upstream
Tssr115575	transcription start site region 115575	1513 bp upstream