rs33709032 SNP Detail

Summary

• ID
  rs33709032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACAGCA GTATTTCCTG
  CAGAAATCTA CTGGGTGGGA GAGAGATGAC AGAAAACACT GAAATCCACC TTAGGTTCAT
  ATTGATAGTA TTTCCTGCAT TGAGTATTTG CTTATCAGAA ATATCTATGG GTATATTACT
  GAGTCAATGA GGTGGGGATA AAATAAAGTT CTGCCTTCAA ATAACAATAA GAGTGCTTTA
  Y
  ATATACAAAC CCATATAAAA TATGAACACA TGGAATAAGA ATTTATCAGA AAAATTATTA
  AGTGGAAGTG ACTAACTGAT GAAGCCAGAT GAAGCAAGAA AGCATTTTTC TTATTCAGCG
  AAAGGAAGAC TCTTACCTAT TTGATATAAA GAAACAGCTT GTAGAACAAA ATGGATAGGG
  ATAGGGAAAT AGAGAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47331279	NES11381463	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33709032					SNP	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331279	NES11381463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353019 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	Intron
Rr474303	regulatory region 474303	864 bp proximal
Rr474304	regulatory region 474304	1102 bp proximal
Tssr115574	transcription start site region 115574	1348 bp upstream
Tssr115575	transcription start site region 115575	1406 bp upstream