rs33709588 SNP Detail

Summary

• ID
  rs33709588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAAGCC AGATGAAGCA
  AGAAAGCATT TTTCTTATTC AGCGAAAGGA AGACTCTTAC CTATTTGATA TAAAGAAACA
  GCTTGTAGAA CAAAATGGAT AGGGATAGGG AAATAGAGAA CCATTATTTA GGGAAGCAAT
  ATAAATGAAA CATAAGAAAG TTAGGTTCTA GTCAGGAGGT CAGGAATCGT TGGACTGTTA
  Y
  AAGACGACTC AAGAAGGAGC TTCAGCAGGA CTCTGGCTGG ACTGGGTTAC TTTAACAGTA
  CAGTTACAGA AACAGAGGAC TGAAAAATTC TGGGACAGAG AGAGGAGAGC AGGAAATAGG
  AAATTCTCTT CTTGGTCATC TCTCTGCTCT CTTCTTGGTT TGATGACTCC TCATATTATG
  CTTTTAAATC CAGAACAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331285	NES11381466	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33709588					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331285	NES11381466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353296 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	837 bp upstream
Rr474303	regulatory region 474303	587 bp proximal
Rr474304	regulatory region 474304	825 bp proximal
Tssr115574	transcription start site region 115574	1071 bp upstream
Tssr115575	transcription start site region 115575	1129 bp upstream