rs33710289 SNP Detail

Summary

• ID
  rs33710289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTGGA CTGGGTTACT
  TTAACAGTAC AGTTACAGAA ACAGAGGACT GAAAAATTCT GGGACAGAGA GAGGAGAGCA
  GGAAATAGGA AATTCTCTTC TTGGTCATCT CTCTGCTCTC TTCTTGGTTT GATGACTCCT
  CATATTATGC TTTTAAATCC AGAACAAGCC AAGGCTCACT GCTTTCTGGG TTGTTTCTCA
  Y
  AGGAAATATA AGATTTAGAT AGAGAGGCTG TTTGAAAAAA AAATGGGTAA AACACATTTC
  TTAGTTTTAT ATTCTTAAAA ACTTTCCTGT TACTAATACT GCATAATACA CTGTTTTATT
  AACTTATGCA TTTCCTGTTC ATTTTATTCC TCCTTAATTC TAAACAACTG GGAATAATGT
  TGGAATTTAC AGAAGAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331297	NES11381470	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33710289					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331297	NES11381470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353528 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	605 bp upstream
Rr474303	regulatory region 474303	355 bp proximal
Rr474304	regulatory region 474304	593 bp proximal
Tssr115574	transcription start site region 115574	839 bp upstream
Tssr115575	transcription start site region 115575	897 bp upstream