rs33711297 SNP Detail

Summary

• ID
  rs33711297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119354109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCGCTGA TGTAGGAGGA
  ACTGAAGCTG TCTGGCCTTA CCTCTGCTTT TCAATCCACC TGCCTCCCCA GGCACAGAGG
  TGCCCACACA CTGCATCACC GAAAGAGAAT CTGGCCAGGC AGGTTCCACA GCTGCAAGAA
  CATTTGTTTG CACAAAGAAT TTTCATTTCC TGCCAAAGGA GTTCTTGAGG TTTTTGGCAA
  W
  CATCACACCA CTTTAATTTC CTTTTATGGA AAAAGAGCCT TAAGTCTAGT CTGATCTTAG
  ATGTACCTTC TCCTTCCCAA CCCCAACCCC CATCCTCATC CAACCCCACA TGACATTTTA
  AACAGCTTCC ATTTTCTTAG AGTGAAATGG TAGCCATCTC CCTGATTTGA TAGTTTCAGG
  TATGAAGCCT GAATTGTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331306	NES11381473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33711297					SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331306	NES11381473	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119354109 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	24 bp upstream
Rr474303	regulatory region 474303	within coordinates
Rr474304	regulatory region 474304	12 bp proximal
Tssr115574	transcription start site region 115574	258 bp upstream
Tssr115575	transcription start site region 115575	316 bp upstream