rs33711300 SNP Detail

Summary

• ID
  rs33711300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119354152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTTTCA ATCCACCTGC
  CTCCCCAGGC ACAGAGGTGC CCACACACTG CATCACCGAA AGAGAATCTG GCCAGGCAGG
  TTCCACAGCT GCAAGAACAT TTGTTTGCAC AAAGAATTTT CATTTCCTGC CAAAGGAGTT
  CTTGAGGTTT TTGGCAATCA TCACACCACT TTAATTTCCT TTTATGGAAA AAGAGCCTTA
  R
  GTCTAGTCTG ATCTTAGATG TACCTTCTCC TTCCCAACCC CAACCCCCAT CCTCATCCAA
  CCCCACATGA CATTTTAAAC AGCTTCCATT TTCTTAGAGT GAAATGGTAG CCATCTCCCT
  GATTTGATAG TTTCAGGTAT GAAGCCTGAA TTGTGGGTAT TGTAGTTCTC TTGCCTTCCA
  GCGTTTCTGG TTGGGCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331309	NES11381474	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33711300					SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331309	NES11381474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119354152 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	within coordinates
Rr474303	regulatory region 474303	32 bp distal
Rr474304	regulatory region 474304	within coordinates
Tssr115574	transcription start site region 115574	215 bp upstream
Tssr115575	transcription start site region 115575	273 bp upstream