rs33711303 SNP Detail

Summary

• ID
  rs33711303
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:119354460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCATCTC CCTGATTTGA
  TAGTTTCAGG TATGAAGCCT GAATTGTGGG TATTGTAGTT CTCTTGCCTT CCAGCGTTTC
  TGGTTGGGCA GCATCTGTGT CACGTTGGTA GGTATTTGAA TTCCAGGTAG CTCTGTCAGG
  AAGAGTGCTG GTGCTCTTGG ATCACGGAGA CAGGCATGTG CCTAAGCTGA AGAAACCTGG
  M
  CTCATATCCA CAGATGTAAG TGTTACTTTT AAAACATAAT ATTCCTTGCA TTGTTGATGT
  GTGTTACGCA CTGGGAAGTT CATGATTTTC AGAAGCATTA ACTAATGGAC TGGTTCTTCT
  TTTATAAGCA CTGCTTGAAA AAAAAAAACT GGGAGGTAAC TTATTCAAAA TACTTGTGGG
  ACAGAGTTAG AACAACACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47331312	NES11381475	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33711303					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47331312	NES11381475	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119354460 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Macc1	metastasis associated in colon cancer 1			Intron
				mRNA-UTR
Rr474303	regulatory region 474303			340 bp distal
Rr474304	regulatory region 474304			within coordinates
Tssr115574	transcription start site region 115574			36 bp downstream
Tssr115575	transcription start site region 115575			33 bp downstream