rs33711680 SNP Detail

Summary

• ID
  rs33711680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105512101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTCTTCGC TGCCATTTCG TTGCTGGCAG AGGCGCCCTG
  GCCCCGTGTC TTTCAGACCA GCAAATCCGG GCTGCAGCTG TGGAGGTGCT GGGCACGTTA
  R
  TTTTGCAATA AGGGATAAGG AAGGTCTATG AGGCCTTGCA CACTCTGGCA TCCGTAGACT
  GGGAATTACC CTGGCTTTGC TTTTGAAAAG TTTCTCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45311165	mCV27580904	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss147168857	ENSMUSSNP7210854	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G		G
ss320448073	CHEV_2_105521913	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33711680					SNP	A	G	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105512101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12021	CpG island 12021	68 bp distal
Cpgi12022	CpG island 12022	335 bp proximal
Pax6	paired box 6	within coordinates
Rr55347	regulatory region 55347	within coordinates
Rr366621	regulatory region 366621	within coordinates
Tssr588	transcription start site region 588	1810 bp upstream
Tssr19262	transcription start site region 19262	438 bp upstream
Tssr19263	transcription start site region 19263	732 bp upstream
Tssr19264	transcription start site region 19264	749 bp upstream
Tssr19265	transcription start site region 19265	927 bp upstream
Tssr19266	transcription start site region 19266	972 bp upstream
Tssr19267	transcription start site region 19267	1212 bp upstream
Tssr19268	transcription start site region 19268	1258 bp upstream