rs33713645 SNP Detail

Summary

• ID
  rs33713645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11989370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACCCTG TGCTCAAATC
  CTTATGTTGC ATCCTGCAGC AGATTGCCAC ATTTGCTATA AGCCAGAACA ATTATAAGGA
  CTGCGTAAAA TGCTTCCAGT AAAGTGCTCA GGCCACGCCA CTCTACATGG ATGACCTGTG
  ATGATGTCCT GTTATGTCAA GATCCACTCA GTTTGAGAAG CCCACATCCT GTCCCCTCAG
  K
  GAGAGTAGCT GTATAGTATA TAGAATCCTA CTGCTTGGAA CTTTTACTAT ATCCAGGACT
  TATTTATATT GTGTTTACAG ATCTCCAGGA CAAAAGCAGA CAGTGGTGAC ATTCCTGTGG
  CCTCTAACAT TATTATCACC TTGTTACACT ATCTGTCTTC CATTCCTAGT CCCCTGTAGG
  AGCGTGACCT GTTCCCATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48347114	NES12242106	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	G	G	G
ss145165352	ENSMUSSNP1456463	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33713645					SNP	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48347114	NES12242106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11989370 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334164	regulatory region 334164	1170 bp distal
Rr343776	regulatory region 343776	504 bp distal