rs33713649 SNP Detail

Summary

• ID
  rs33713649
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11986706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAACATTT CAGGGTTGCC
  TAGAACTGTG TTCCCAGCAA GGAAGGCTCC TCAGAAGCAT TTGGCAAGGG GATGAATAAC
  TTAAACAAAT CAAAACAAAA CTAAGACCTT CAGGAAGCTC ACTCTGACTC CAGTCTCATT
  TAGTGGTTTT GAAAGCTCCT CATTCCTTCC ACCAACACAG GATGATCTTC TCTTCATCGC
  S
  ACCCTTTTAT GCGGTCACAC CCCACGCGCC CCTCAGACAT GCTTGATGAC TTTGTGTCGG
  CTGATAAATC CTGAGGAGGC AGTTTACTGA CTGGCCCAGC ACTTTTGGTA ATACATTATT
  TTTCTGCAGA ACTCCATCTC ACATTAACAC AAACAGGCAC GATGCTCAGA CCATCCATGC
  TTCAGGTGCT GGGCCTGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48347127	NES12242172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33713649					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48347127	NES12242172	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11986706 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334163	regulatory region 334163	1106 bp distal
Rr334164	regulatory region 334164	1095 bp proximal
Rr343776	regulatory region 343776	1763 bp proximal