rs33714019 SNP Detail

Summary

• ID
  rs33714019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108889358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA GTCAGTCACA TCAGGAAGGG
  Y
  TCGAATCAGC ATGCTGACCC CTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46309332	mCV23599044	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss61451628	NES16833325	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	C	T		C	T	T	C		T
ss136953557	ENSMUSSNP2279795	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss323192978	CHEV_9_108962804	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33714019					SNP	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451628	NES16833325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108889358 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	within coordinates
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	370 bp downstream
Rr686957	regulatory region 686957	66 bp distal
Rr686958	regulatory region 686958	607 bp distal
Rr686959	regulatory region 686959	461 bp distal
Trex1	three prime repair exonuclease 1	567 bp upstream
Tssr91573	transcription start site region 91573	1885 bp upstream
Tssr91574	transcription start site region 91574	1652 bp upstream
Tssr91575	transcription start site region 91575	1605 bp upstream
Tssr91576	transcription start site region 91576	1519 bp upstream
Tssr91577	transcription start site region 91577	1031 bp upstream
Tssr91578	transcription start site region 91578	584 bp upstream
Tssr91579	transcription start site region 91579	519 bp upstream