rs33714040 SNP Detail

Summary

• ID
  rs33714040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152607885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCGAAA AACCAAAAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGAAGCCT TGAGGTGGGA TCTGATTTGA
  AGGAGACCAC AATGACTGAA AAAGGTTCTG ATCAGAGGGA GAAGTGAGAG GTATGTTGTA
  AAATAGCTGA GGAGCTGGGT ACACAGAGCC CCACTAGATT GTGTTCCAAG CAGGATGGGG
  K
  AGCGTCGGTG TTTGGGTCGT CCAAGGAAAG GATGCTAAGA AGGAATTAGT CATATGAGAT
  TTGAGGGCAA TGATTGTGCG GGATGGAGCT GGAGGGAATG ATAGTCCCTT AGTCTGACAC
  CTGGGGTGGG TGGAGACCCA GAGCACTGGA GGTGGGGCAT CCTTAAACCC AGGGTCTCTA
  CACAGTGGTT TAAATAGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45312227	mCV27575112	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss147974098	ENSMUSSNP7125202	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33714040					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152607885 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	928 bp downstream
Cpgi12465	CpG island 12465	497 bp proximal
Rr567459	regulatory region 567459	289 bp distal
Rr567460	regulatory region 567460	353 bp proximal
Rr567461	regulatory region 567461	702 bp proximal
Rr567462	regulatory region 567462	1530 bp proximal
Tssr26855	transcription start site region 26855	591 bp upstream