rs33714745 SNP Detail

Summary

• ID
  rs33714745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCATAAG CATATGGTGA
  CAGCCGCAAG AGGGAGTGTT GGGCATCAGG ATAGGACATT AGTCAGGGAT GGTGGAGGAT
  TTCAGACTGA GGTGTGAGTG GCTAACTGTG GTGGCCTCGG GACCAGGATA AATAAAACAA
  GTCAGGACAG GCTGTCAGGG ACAGCAGTGC TATTGAGGCT GATCCTGCTG GGGACCCAAG
  R
  TTCACAGGAC TGTGGTAAGA AGGGAGCCAG GCCGGGCTCC TTAGGAACAC GGCGGGGAGA
  CATGACTGCC CCATGAGAAT GTAAGCTGTC ACGGTGCTAT CCACAGGGCC TTGCAGGAAG
  CTCTGGAGGC TAAGGGACTT GGAAGTCCCC ATCCCGACCC AGGACCCCTA TCTATACTTC
  CCATGTGCCC TTCACCGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46309829	mCV25163716	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss52013344	NES15030274	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G	G	A	A	G	A
ss136411258	ENSMUSSNP6422209	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33714745					SNP	G	G	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013344	NES15030274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316888 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	160 bp distal
Rr677906	regulatory region 677906	156 bp proximal
Tssr84790	transcription start site region 84790	345 bp upstream
Tssr84791	transcription start site region 84791	476 bp upstream
Tssr84792	transcription start site region 84792	524 bp upstream
Tssr84793	transcription start site region 84793	1529 bp upstream