rs33715191 SNP Detail

Summary

• ID
  rs33715191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGTCA CACATTGGAG
  CTCAAATTAC TTTGATCCCG AATTTTAAAA CATTATTTCA GCAAATATGG GTATGTGAGC
  GCATATTTGT TATTTTTTTC TCAACCAGAC TTTGACCCTT TTAGACGTCA AACTATTCAA
  ACCTCTCATT TCCCCTTTAA AGGTATTTTA AAGTATACCT ATATGAAAAC AAAAGCATAA
  Y
  ACAAATCCCA TAGTATAATC ACATGTACCT TACATAGAAG GCACTATCTG GGAGTGAAAG
  GAAAGTATAT AGATATTCAT ATGGCTATAG AGAGAAATGT ATGTGAGCGC AGTCAACAAA
  AGAGCAGGCC AGAACGCTAA CACCTGGAAC CCTGTTCACA CCGGCCCCTC CATCCGCCTT
  TTTCTAGGCA AAAGGCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45312695	mCV22628446	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147514347	ENSMUSSNP115286	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T		T
ss320498568	CHEV_2_126758065	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33715191					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			438 bp proximal
Gm75308	predicted gene, 75308			364 bp upstream
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			726 bp proximal
Rr564424	regulatory region 564424			759 bp proximal
Rr564425	regulatory region 564425			896 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			423 bp upstream
Tssr26085	transcription start site region 26085			664 bp downstream
Tssr26086	transcription start site region 26086			793 bp downstream
Tssr26087	transcription start site region 26087			824 bp downstream
Tssr26088	transcription start site region 26088			886 bp downstream
Tssr26089	transcription start site region 26089			900 bp downstream
Tssr26090	transcription start site region 26090			1538 bp downstream