rs33715203 SNP Detail

Summary

• ID
  rs33715203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174125572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAATGCA TGAGTCCGTG
  GCTCAAAGAC TACCCTAAAA ACCCACACGG AGAGCAGCAG TTGAAGGGCA TTCTCGTGGA
  TACTCACTCT CAGCTTCCTA TGGTCTTCCA GCACACCTCA GTGGAACAGT GTTCACCATG
  AGCTGACTGT CGGCTTGCAA ATTCCTACAT CTACAGCCGC GGGGGGCGGG GTTGTTTGCC
  R
  GTGGGGTTCA TACCTTCTTG GAGGCTGCTC TAATTAATTA CAGTTACTTT AACAGCCCTG
  ACAAAAGTAA CCACCTTTGA TAAGGTTAGT GTTTACTTGA GGCTCTGATC CTCAAGCATT
  CACGCTCTTC GGTCATTAAC ACTCATTCAC GTACGGATCC TCATTCCCCT GAATATTTAC
  AATTTTGCGT TCTGGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45312595	mCV24952613	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148341295	ENSMUSSNP4578835	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320627354	CHEV_2_174109280	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33715203					SNP	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174125572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	314 bp proximal
Gnas	GNAS complex locus	541 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Tssr789	transcription start site region 789	449 bp upstream
Tssr790	transcription start site region 790	489 bp upstream
Tssr22087	transcription start site region 22087	533 bp upstream
Tssr22088	transcription start site region 22088	831 bp upstream
Tssr22089	transcription start site region 22089	1494 bp upstream
Tssr22090	transcription start site region 22090	1518 bp upstream
Tssr22091	transcription start site region 22091	1573 bp upstream
Tssr28006	transcription start site region 28006	1385 bp downstream