rs33715793 SNP Detail

Summary

• ID
  rs33715793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGT CACTTAAACT TCTGTCACTA
  R
  TCTCCCGACA CCTCCACCTG TACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46309264	mCV24918380	ABI	CRAMUS_MOUSE	f	SNP	A						G
ss50677590	NES14010794	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	G	G	G		G	A	G	G		G
ss136330424	ENSMUSSNP2869314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						G
ss322916241	CHEV_9_40262473	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33715793					SNP	A	G	A	A	A	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677590	NES14010794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	264 bp proximal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	516 bp proximal
Rr676840	regulatory region 676840	772 bp proximal
Rr676841	regulatory region 676841	947 bp proximal
Tssr84449	transcription start site region 84449	405 bp upstream
Tssr84450	transcription start site region 84450	1003 bp upstream
Tssr88934	transcription start site region 88934	454 bp downstream
Tssr88935	transcription start site region 88935	530 bp downstream
Tssr88936	transcription start site region 88936	555 bp downstream
Tssr88937	transcription start site region 88937	618 bp downstream
Tssr88938	transcription start site region 88938	886 bp downstream
Tssr88939	transcription start site region 88939	893 bp downstream
Tssr88940	transcription start site region 88940	949 bp downstream
Tssr88941	transcription start site region 88941	1231 bp downstream
Tssr88942	transcription start site region 88942	1249 bp downstream
Tssr88943	transcription start site region 88943	1264 bp downstream
Tssr88944	transcription start site region 88944	1307 bp downstream
Tssr88945	transcription start site region 88945	1342 bp downstream
Tssr88946	transcription start site region 88946	1424 bp downstream
Tssr88947	transcription start site region 88947	1452 bp downstream
Tssr88948	transcription start site region 88948	1499 bp downstream