rs33715840 SNP Detail

Summary

• ID
  rs33715840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106433392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAATGCCC CACCAACTGT
  GGTGGTGCAG TTCTGTAATC CCAGCACTTG GGATGCTGAA GCAGAAGGAT GACCATGAGT
  TTAAGGTCTG CCTACTCACA GTGAGTTCTA GCTCAGCCTG GGCTAGAAAG AGACCTTATC
  TCCAAATAAG AAACAAACAA ACAAGCAAAC AAAAGGGTTC TGCCTGTACA ATGTGGGAGA
  Y
  ATTTTAAGGT CAGTGTTTTG TATAAATATA GTTTTAATTA AAAGATAAAG ACAAATTATT
  TATAAGCATA TTTCATTTTT TAAAAAAACG ATTTTGCTGG GCACGACAGC ATACATCTTT
  AATCCCAGCA ATCAGGAAGG ACAAGTGAAT CTCAGATTTG AGTCCAGCCT GGTCTACACT
  GTGAGTTCCA GTGTAGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848091	NES10714950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33715840					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848091	NES10714950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106433392 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	within coordinates
Tssr34972	transcription start site region 34972	573 bp upstream