rs33715843 SNP Detail

Summary

• ID
  rs33715843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106433788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAGCTT ATCTCAATAA
  CTAACTAAAC AAAATTATAC ATACATACAT ACATATATAT ATATATGCCT GTATGATATC
  AATCTAAAAA CACCTAGATA TATAGGATTT AAGACTTAAG AGCAGAAATA AGAACTTTCA
  TATAATCTAA ACCATAGTAA TGATGATTGA TTACAATTGT GAGTTTCAAA TCACAGTAGT
  Y
  CTCTTTTAAA AAACAACGCT GTGGTAAATG GGAGAGGAAT ACAATATATC TCACAGCACA
  TAATACTCCT TTGTTTCAGG GTACAGAATG ACTTCTATTC ACTTTCAGTA CTTCTGTTGC
  ATCTGGCACT GCCAACTCCA GGTCATTTGA AGGGACTTTG TACTTCTATA CTTCTGTGTC
  AACTCCTAAC ACTTTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46848094	NES10714859	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33715843					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848094	NES10714859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106433788 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	within coordinates
Tssr34972	transcription start site region 34972	969 bp upstream
Tssr34973	transcription start site region 34973	1670 bp downstream
Tssr34974	transcription start site region 34974	1779 bp downstream