rs33715874 SNP Detail

Summary

• ID
  rs33715874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:81773119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGGCTT GGCAACTTTT
  AAATGGAGAT GATAAAAAGA AACTGAACCT TAGATTAATA CTGAAGAAAT GGATTCCCAG
  CGAAAACCAA AACTCTTTTG GATTTGAAGA AGTCAACTCT GAACTTGTAT GGTTCTGAGA
  CTTAACTTGA AAAAAAAAAC CCATAATATT AGAGAATATT TAGGTCTTTG GTTCCAAATG
  R
  TGCCCAAAAT TTTCCAAGAA GATTTAAAAC CAACTACACA CAGCTGGGGA CGTAGTTCTG
  GGGACCTAGT TCAGTGGATA GCTGACCTGA CATTCAGGAA GCCTTGGGTT CCATCCCAGC
  ACTGCATATA CTGGAAATTG TGGTACGGGC TTATAATCCC AGCACCCAGG AGGTAGAGGC
  AGCATGATCA GAAGTTCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39569316	mCV24670092	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss146083795	ENSMUSSNP6995717	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33715874					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81773119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc8a1	solute carrier family 8 (sodium/calcium exchanger), member 1			Intron
				Noncoding-Transcript-Variant
Tssr149528	transcription start site region 149528			52 bp upstream