rs33716074 SNP Detail

Summary

• ID
  rs33716074
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93033420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAGAGG AGAGCAGACA
  CCTAGCTGTT CCTTCCACCA CTGTTCCCCT TTTGTGCCCT TGGCAGACAT AATTAATCAA
  ATTTGAGATC CTGACAGACA ACACTAATGG ATTCAACACG GTCCTGGCAG GGTCAGGCAT
  CTTGCAACTA GTTGCTAACC TAGCCTGCAG TTCAAGTTTG TGTGTGTGTG TGTGTGTGTG
  K
  GGGGGGGTGT TGGTTGGTTG GTTGGTTGTG AACCTATTAG TCTGGGGTGT TTGTTTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTCT GTTGGTTGGT TGGTTGGTTG TGAACCTATT
  AGTCTGGGGT GTTTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTCTGTTG
  GTTGGTTGGT TGGTTGTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45312596	mCV23016582	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33716074					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93033420 () rs orientation: forward

Symbol	Name	Function Class
Rr561119	regulatory region 561119	1793 bp distal
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	855 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	1316 bp downstream
Tspan18	tetraspanin 18	mRNA-UTR
Tssr18989	transcription start site region 18989	1460 bp downstream
Tssr25280	transcription start site region 25280	214 bp downstream
Tssr25281	transcription start site region 25281	243 bp downstream
Tssr25282	transcription start site region 25282	262 bp downstream
Tssr25283	transcription start site region 25283	364 bp downstream
Tssr25284	transcription start site region 25284	579 bp downstream