rs33716589 SNP Detail

Summary

• ID
  rs33716589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106433897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAACAACG CTGTGGTAAA TGGGAGAGGA ATACAATATA
  TCTCACAGCA CATAATACTC CTTTGTTTCA GGGTACAGAA TGACTTCTAT TCACTTTCAG
  Y
  ACTTCTGTTG CATCTGGCAC TGCCAACTCC AGGTCATTTG AAGGGACTTT GTACTTCTAT
  ACTTCTGTGT CAACTCCTAA CACTTTTCTT CTTTCACTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46848100	NES10714865	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	T	T		C	T	C	C		C
ss135579882	ENSMUSSNP939634	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320863768	CHEV_3_106329499	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33716589					SNP	T	T	C	C	C	T	C	C	C	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848100	NES10714865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106433897 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	within coordinates
Tssr34972	transcription start site region 34972	1078 bp upstream
Tssr34973	transcription start site region 34973	1561 bp downstream
Tssr34974	transcription start site region 34974	1670 bp downstream