rs33717990 SNP Detail

Summary

• ID
  rs33717990
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATACACAC TGAGCCCTGT GACCCAGCAA TTTCATCCCA
  GGAGAAATGA AACGTGTTCA CAAATTGATG ATGTGCATAG AACATTTATA GAAAGTATGC
  K
  CACAATTCGA AACTCCCCAG GGGCCATTTG AAAGAAGAAT AAATTAGCAC ATCTTGGCAC
  ATTCATACAG TGGAAGACTG CGTCCCTGTC AGGAGGATC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45312082	mCV23867907	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss148023847	ENSMUSSNP4726815	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320569679	CHEV_2_154014975	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33717990					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031159 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1579 bp upstream
Rr567773	regulatory region 567773	1442 bp distal
Rr567774	regulatory region 567774	1089 bp proximal
Rr567775	regulatory region 567775	1590 bp proximal
Rr567776	regulatory region 567776	1816 bp proximal
Tssr20971	transcription start site region 20971	1510 bp upstream
Tssr20972	transcription start site region 20972	1524 bp upstream
Tssr20973	transcription start site region 20973	1537 bp upstream
Tssr20974	transcription start site region 20974	1567 bp upstream
Tssr20975	transcription start site region 20975	1594 bp upstream