rs33718264 SNP Detail

Summary

• ID
  rs33718264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88747087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTCCTTC CAAGTTCCAG
  GATTACAGGA ATGAGGCACT ATACCCTGCT TTCCTTTTGA GACAGACTTC TTTTTTTTTT
  TTTTTTTTTT TTTTTTTCTG AGGCAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT
  CACTCTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCGC CTGCCTCTGC CTCCCGAGTG
  Y
  TGGGATGAAA GGCGCGCGCC ACCACCGCGC AGCTGAGACA GAAACTTCTT ATGAAGGCCA
  GGGTGACCTC TAAATCTTGG CACTCCTCCA GCCTCACCCT ACCCAGTACT GATACATAAA
  CCTTCACTGC CAAGGGCAGT TTGATAGGCT ACTTCTAGGC TTCAGTTTCC TTCTATGTAA
  AGGGAATTCC TGAAATTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39570220	mCV25115704	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss146190957	ENSMUSSNP3623704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss325501547	CHEV_17_88838999	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33718264					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88747087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	533 bp proximal
Foxn2	forkhead box N2	1052 bp upstream
Rr340320	regulatory region 340320	113 bp proximal
Rr343689	regulatory region 343689	1287 bp distal
Rr405533	regulatory region 405533	704 bp upstream
Tssr146228	transcription start site region 146228	1055 bp upstream
Tssr146229	transcription start site region 146229	1083 bp upstream
Tssr146230	transcription start site region 146230	1412 bp upstream
Tssr146231	transcription start site region 146231	1865 bp upstream