rs33718267 SNP Detail

Summary

• ID
  rs33718267
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88374207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAGCTG TAGGGAGCGC
  TCCAGGCTCT GTGCGTTTTT AGTCCAGCTG AAGGGATTTA TTTGCAAACC TTAAGAAATC
  TTGTTTCGGC TCTGCTGAGA ACTTAAGAGA GAGTCTGGAG TCGGTTCCAG CTTTTGTCGC
  CCAAACTTTC AGAATGTTTT AGATCTTTAA CCAAGTTAGT TTGCTTTAGG CTTTTTTTTT
  K
  GGGGGGGGGG GGGGGCAAGT GGTCTACATG GTGTTCCGGA AGAAGTAAAA TAAAACGGGT
  GGAGGTTGTG ATGGATTATA TTGGTTTTGT TTTAGGTCCC ACGAAGTCAA GAAAGATAAA
  CCCCCGAGAG GAATAATCTT TTGTATCTGT GTCTGGTCCC CTTAGCACAA TCTCTCCCCA
  AGGAAAATGT GTTTCTATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39570224	mCV23140502	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss146187240	ENSMUSSNP6617808	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33718267					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88374207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	134 bp distal
Fbxo11	F-box protein 11	1488 bp upstream
Rr333911	regulatory region 333911	794 bp proximal
Rr333912	regulatory region 333912	1594 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	1484 bp proximal
Rr370332	regulatory region 370332	192 bp downstream
Rr405528	regulatory region 405528	379 bp downstream
Tssr146222	transcription start site region 146222	1978 bp downstream
Tssr146223	transcription start site region 146223	1950 bp downstream
Tssr149795	transcription start site region 149795	1050 bp upstream
Tssr149796	transcription start site region 149796	948 bp upstream
Tssr149797	transcription start site region 149797	906 bp upstream
Tssr149798	transcription start site region 149798	786 bp upstream
Tssr149799	transcription start site region 149799	692 bp upstream