rs33719480 SNP Detail

Summary

• ID
  rs33719480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45013529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGCATTT GAGCAAAAGA
  TGAAGAGACT GTGTAGTTTC CACTCACAGT TTATGTCTGT ACCATGGTCC TTGGTATTAA
  GGAAAGCCAG CCTTCTAAAG AAACACTGCT ATTGTGAGAT TCCCACATAA AGACGGTCAC
  TGTAACTTAG CTACTAATAA AAATCTGTGG CTCGAGCAGC TTCCAGAGAG GCAATGACTG
  R
  GTGAGTGGGT ATTCTATTGA ATATACCATT ACATTACAAG CCAGCATGTA ATGGCATGGG
  ACGGTTATAT ATCAAGAAGG TTGTAAGGGG AAGTTCGCAG TATGATCTCA ACTACAAGAA
  GGAAACAATA CGATATTCAT GTCAGAAGCC TGTGGGCCGG GCATGTTTTG TCTGAGAGTC
  ACTTAGACTG TCATTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46310201	mCV24046714	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136405333	ENSMUSSNP1855337	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33719480					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45013529 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	415 bp proximal
Tssr84725	transcription start site region 84725	643 bp upstream
Tssr84726	transcription start site region 84726	1605 bp upstream
Tssr84727	transcription start site region 84727	1635 bp upstream
Tssr84728	transcription start site region 84728	1663 bp upstream