rs33719581 SNP Detail

Summary

• ID
  rs33719581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:26221322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCAAAGT TACAAAAGGG
  GAATTCTCCC CTCTATCCCC TAGGAATTGA TTCATCTCAC TAGAGCAGGC ATAGTTCAAA
  GAGAAGGACA TAATGGCCCT TCACCTTTCT CCTTATATCC AAGATGAAAA TGCATAAGCT
  ATACCCTCCC CAGCACCACA CTTCCATTTT CTTTCACTAC TCTCAAAAAT TCTCCACCAA
  Y
  TTTAGCTCCA GGTTTCCCAA GCAGCAAGGA GAAAATGAAT AAATAACCAT AAGAACTGAA
  CAAGTCTACC ACATGCCAGC ATGCCAGCAG GTCACGGAAG AGAAAGGTCA CTCCCAAGTC
  CTGGAGTTCT CCTTCCTGAC CCTACAAGCT TCCGGTCACC CCATGCCAGC TGCACAGAAA
  GCAGGTTTCT GCACCAACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47832401	NES11980213	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33719581					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47832401	NES11980213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:26221322 () rs orientation: forward

Symbol	Name	Function Class
L3mbtl3	L3MBTL3 histone methyl-lysine binding protein	within coordinates
Rr214307	regulatory region 214307	122 bp distal
Rr214308	regulatory region 214308	479 bp proximal
Tssr97136	transcription start site region 97136	1914 bp upstream