rs33720323 SNP Detail

Summary

• ID
  rs33720323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:26222317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCACAC TAACATATTC
  TTACTTGACA AGTGCAAGAT GTGAGAAATT GCACCAGACA TTTAGAGTAG ACAGAAGGGA
  TCCTAATGGT TGCTAAGTTG CAAACCACCC TGCATTATAA ACACCCCAAA AAGGACACCA
  GACCGAATCT CTTGTTGGAA AGTGCAGGTC CGACACTTGG AAGGGTAAAT ACTCTTGAAG
  Y
  TAAAAGGTAA TAATATCTCT ACGAACACAC TTAACCTTAG CCATCTTCTC CTCTGCTAAC
  ATTACTGCCA TAACGGACAG CCTAAGTACA AAGCAGACAT GCGGTGTCAC TTGGGGACAC
  AGCCCCGAGC CAGAGACCAA GGATGGACAC CAAGGGCTGA TGCCTGAAAC AGGTGTAAGA
  GGAAGCTATA TGCACACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47832413	NES11980219	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33720323					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47832413	NES11980219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:26222317 () rs orientation: forward

Symbol	Name	Function Class
L3mbtl3	L3MBTL3 histone methyl-lysine binding protein	within coordinates
Rr214307	regulatory region 214307	1117 bp distal
Rr214308	regulatory region 214308	117 bp distal
Rr214309	regulatory region 214309	1284 bp proximal